Nesting success in Redshank Tringa totanus breeding on coastal meadows and the importance of habitat features used as perches by avian predators

Capsule Nest survival rates could not be explained by distance to habitat edges or other features used by predators.

Aims To investigate if predation on Redshank nests was affected by habitat characteristics at a local scale.

Methods We examined survival rates of Redshank nests on coastal meadows on the Baltic island of Gotland, Sweden, over two breeding seasons. We analysed nest survival rates in relation to several habitat characteristics that may benefit predators searching for nests. We examined existing studies concerning predation rates on wader nests in relation to edges and habitat features potentially used by avian predators.

Results We found no significant effects of distance to habitat edge or to nearest potential lookout for avian predators or to shoreline. Abundance of Lapwings Vanellus vanellus, an aggressive species with active nest-defence, did not have any significant effect on nest survival rate, nor did vegetation concealment of nests. Nest survival rates were significantly different between years and lower later in the season.

Conclusions There is only weak support for general effects on wader nest predation rates of proximity to edges and features used by avian predators. Simple mechanical management actions such as removal of trees and bushes on coastal meadows may not directly, and by itself, result in higher reproductive success of waders. Further understanding is needed of the behaviour of predators and the composition of the predator community in different landscapes in order to increase the efficiency of management actions to remove threats to vulnerable species on coastal meadows.     

The Lectin Domain of the Polypeptide GalNAc Transferase Family of Glycosyltransferases (ppGalNAc Ts) Acts as a Switch Directing Glycopeptide Substrate Glycosylation in an N- or C-terminal Direction,Further Controlling Mucin Type O-Glycosylation

Mucin type O-glycosylation is initiated by a large family of polypeptide GalNAc transferases (ppGalNAc Ts) that add α-GalNAc to the Ser and Thr residues of peptides. Of the 20 human isoforms, all but one are composed of two globular domains linked by a short flexible linker: a catalytic domain and a ricin-like lectin carbohydrate binding domain. Presently, the roles of the catalytic and lectin domains in peptide and glycopeptide recognition and specificity remain unclear. To systematically study the role of the lectin domain in ppGalNAc T glycopeptide substrate utilization, we have developed a series of novel random glycopeptide substrates containing a single GalNAc-O-Thr residue placed near either the N or C terminus of the glycopeptide substrate. Our results reveal that the presence and N- or C-terminal placement of the GalNAc-O-Thr can be important determinants of overall catalytic activity and specificity that differ between transferase isoforms. For example, ppGalNAc T1, T2, and T14 prefer C-terminally placed GalNAc-O-Thr, whereas ppGalNAc T3 and T6 prefer N-terminally placed GalNAc-O-Thr. Several transferase isoforms, ppGalNAc T5, T13, and T16, display equally enhanced N- or C-terminal activities relative to the nonglycosylated control peptides. This N- and/or C-terminal selectivity is presumably due to weak glycopeptide binding to the lectin domain, whose orientation relative to the catalytic domain is dynamic and isoform-dependent. Such N- or C-terminal glycopeptide selectivity provides an additional level of control or fidelity for the O-glycosylation of biologically significant sites and suggests that O-glycosylation may in some instances be exquisitely controlled.     

Differences in the Regulation of K-Ras and H-Ras Isoforms by Monoubiquitination

Ras GTPases are signaling switches that control critical cellular processes including gene expression, differentiation, and apoptosis. The major Ras isoforms (K, H, and N) contain a conserved core GTPase domain, but have distinct biological functions. Among the three Ras isoforms there are clear differences in post-translational regulation, which contribute to differences in localization and signaling output. Modification by ubiquitination was recently reported to activate Ras signaling in cells, but the mechanisms of activation are not well understood. Here, we show that H-Ras is activated by monoubiquitination and that ubiquitination at Lys-117 accelerates intrinsic nucleotide exchange, thereby promoting GTP loading. This mechanism of Ras activation is distinct from K-Ras monoubiquitination at Lys-147, which leads to impaired regulator-mediated GTP hydrolysis. These findings reveal that different Ras isoforms are monoubiquitinated at distinct sites, with distinct mechanisms of action, but with a common ability to chronically activate the protein in the absence of a receptor signal or oncogenic mutation.     

M2-like macrophages are responsible for collagen degradation through a mannose receptor–mediated pathway

Tissue remodeling processes critically depend on the timely removal and remodeling of preexisting collagen scaffolds. Nevertheless, many aspects related to the turnover of this abundant extracellular matrix component in vivo are still incompletely understood. We therefore took advantage of recent advances in optical imaging to develop an assay to visualize collagen turnover in situ and identify cell types and molecules involved in this process. Collagen introduced into the dermis of mice underwent cellular endocytosis in a partially matrix metalloproteinase–dependent manner and was subsequently routed to lysosomes for complete degradation. Collagen uptake was predominantly executed by a quantitatively minor population of M2-like macrophages, whereas more abundant Col1a1-expressing fibroblasts and Cx3cr1-expressing macrophages internalized collagen at lower levels. Genetic ablation of the collagen receptors mannose receptor (Mrc1) and urokinase plasminogen activator receptor–associated protein (Endo180 and Mrc2) impaired this intracellular collagen degradation pathway. This study demonstrates the importance of receptor-mediated cellular uptake to collagen turnover in vivo and identifies a key role of M2-like macrophages in this process.     

The Urokinase Receptor Homolog Haldisin Is a Novel Differentiation Marker of Stratum Granulosum in Squamous Epithelia

Several members of the Ly-6/uPAR (LU)-protein domain family are differentially expressed in human squamous epithelia. In some cases, they even play important roles in maintaining skin homeostasis, as exemplified by the secreted single domain member, SLURP-1, the deficiency of which is associated with the development of palmoplantar hyperkeratosis in the congenital skin disorder Mal de Meleda. In the present study, we have characterized a new member of the LU-protein domain family, which we find to be predominantly expressed in the stratum granulosum of human skin, thus resembling the expression of SLURP-1. In accordance with its expression pattern, we denote this protein product, which is encoded by the LYPD5 gene, as Haldisin (human antigen with LU-domains expressed in skin). Two of the five human glycolipid-anchored membrane proteins with multiple LU-domains characterized so far are predominantly confined to squamous epithelia (i.e., C4.4A), to stratum spinosum, and Haldisin to stratum granulosum under normal homeostatic conditions. Whether Haldisin is a prognostic biomarker for certain epithelial malignancies, like C4.4A and SLURP-1, remains to be explored.     

Inhibition of the HIV-1 Spike by Single-PG9/16-Antibody Binding Suggests a Coordinated-Activation Model for Its Three Protomeric Units

The HIV-1 spike is composed of three protomeric units, each containing a peripheral gp120 and a transmembrane gp41 subunit. Binding to the CD4 and the chemokine receptors triggers them to mediate virus entry into cells by membrane fusion. The spikes also represent the major target for neutralizing antibodies (Abs) against the virus. We have studied how two related broadly neutralizing Abs, PG9 and PG16, react with the spike. Unexpectedly, this also suggested how the functions of the individual protomers in the spike depend on each other. The Abs have been shown to bind the V1/V2 loops of gp120, located at the top of the spike. Using blue native-polyacrylamide gel electrophoresis (BN-PAGE), we show that only single Abs or antigen-binding fragments could bind to the spikes of HIV-1 virus-like particles. Apparently, binding to one gp120 sterically interferes with binding to the other two subunits in the spike top. Despite this constraint, all of the protomers of the spike became resistant to CD4 binding and subsequent formation of the coreceptor binding site. These activities were measured by monitoring the sequential complex formation of the spike first with Abs and then with soluble 2d- or 4d-CD4 or with soluble CD4 and the CD4 inducible coreceptor binding site Ab 17b in BN-PAGE. The inhibition of the spike by single-Ab binding suggested that the activation reactions of the individual protomeric units are linked to each other in a coordinated activation process.     

Quotas on Narwhal (Monodon monoceros) Hunting in East Greenland: Trends in Narwhal Killed per Hunter and Potential Impacts of Regulations on Inuit Communities

This study evaluates the introduction of quotas on narwhal hunting in East Greenland with respect to effects on Inuit culture and based on trends in narwhal killed per hunter and assessment of migration patterns. Cultural aspects were assessed through group discussions and comparison between East and Northwest Greenland. Trends in narwhal killed/hunter were modeled from catch statistics using information on number of hunters and climate and ice cover data for the period 1993–2004. Results indicate negative impacts of quotas on Inuit culture; did not detect negative trends in narwhal killed/hunter; and suggest south-west-bound migration, implying potential immigration from non-hunted populations that was not considered in quota setting. The implementation of quotas without local consultations and legal basis in the relevant executive order is therefore in our opinion inappropriate. Conservation and sustainable use of narwhal stocks may be more likely to succeed if local communities are involved through co-management agreements.     

Denning behaviour of ship rats (Rattus rattus) on Taukihepa,a seabird breeding island

Abstract

Den sites of 14 ship rats (Rattus rattus) were located daily during the rat breeding season on Taukihepa (Big South Cape), a seabird island southwest of Rakiura (Stewart Island). In contrast to other New Zealand studies, no arboreal dens were found. Den sites on Taukihepa were in ferns, under logs, in woodpiles, or underground in sooty shearwater (Puffinusgriseus) breeding burrows. The number of times known den sites used was positively related to the amount of leaf litter and woodpiles near the den sites. Overall, 24% of radio‐tagged rats were sharing den sites on any given day. While there was considerable individual variation in the number of times den sites were used, female rats tended to reuse den sites more than males. Many rats were found in dens alone, but frequently males and females shared. Occasionally two females and one male denned together, as did two females, whereas males never denned with another male.